HsaEX1027509 @ hg38
Exon Skipping
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr4:656874-659017:+
Coord C1 exon
chr4:656874-657023
Coord A exon
chr4:657363-657494
Coord C2 exon
chr4:658952-659017
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCTCCAGTCCCTGACACAGTTC
3' ss Score
1.99
5' ss Seq
CTGGTGCGG
5' ss Score
6.48
Exon sequences
Seq C1 exon
GAAGGGGCCCTGGACGACTCCGGGTGGCTCATCAAGAATGTGCTGTCCATGCCCATCGTCAACAAGAAGGAGGAGATTGTGGGAGTCGCCACATTTTACAACAGGAAAGACGGGAAGCCCTTTGACGAACAGGACGAGGTTCTCATGGAG
Seq A exon
TTCCTGGGCTGGTCAGTGATGAACACCGACACCTACGACAAGATGAACAAGCTGGAGAACCGCAAGGACATCGCACAGGACATGGTCCTTTACCACGTGAAGTGCGACAGGGACGAGATCCAGCTCATCCTG
Seq C2 exon
CCAACCAGAGCGCGCCTGGGGAAGGAGCCTGCTGACTGCGATGAGGACGAGCTGGGCGAAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-'28-26,'28-25,29-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.5=100)
A:
PF0159021=GAF=PD(5.1=18.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGCCCTGGACGAC
R:
GATTTCGCCCAGCTCGTCC
Band lengths:
213-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains