Special

BtaEX0026476 @ bosTau6

Exon Skipping

Gene
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1910952-1918571:-
Coord C1 exon
chr18:1918482-1918571
Coord A exon
chr18:1913263-1913445
Coord C2 exon
chr18:1910952-1911455
Length
183 bp
Sequences
Splice sites
3' ss Seq
CCTCTCGTCTCTCCCTCTAGTAC
3' ss Score
10.37
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GAGATGAGCGTGGGCTACGCCAATGGGATCCGGGTGATGAGCATGACGCACACGGGCGAGCCGGGGTTCATGCTCTACATCCCCATAGAG
Seq A exon
TACGCCCTGCACGTATACAATGAAGTGATGAGCGTGGGGCAGAAATACGGAATCCGGAATGCTGGGTATTACGCTCTTCGTAGTCTCCGAATTGAGAAGTTTTTTGCCTTCTGGGGTCAGGACTTAAACACCCTCACCACACCCCTGGAATGCGGAGGAGAGTCTCGGGTGAAGTTAGACAAG
Seq C2 exon
GGCGTGGATTTCATCGGGCGCGACGCGCTGCTGCAGCAGAGGCAGAATGGGGTATACAAGCGCCTCACCATGTTCATCCTGGACGACCACGACACAGACCTGGACCTCTGGCCGTGGTGGGGGGAGCCCATTTACCGGAATGGGCGGTATGTGGGCAAGACCACCAGCAGCGCCTACGGCTACACCCTGGAGCGCCACGTGTGTCTCGGCTTCGTGCACAACTTCTCCGAGGACACAGGGGAGGAGCAGGTGGTGACAGCGGATTTCATCAACCGGGGAGAATATGAGATTGACATTGCAGGACACCGGTTCCAGGCCAAGGCCAAGCTGTACCCGGTCCCCTCCCTCCTCACCCACAAGCGCCGGAAGGAGGACGTGGAGCTAAGTGACTTGCACGGGAAGTGAGGCCGGGGGGCCTCGCTGCCACCCCTCCTTCTCACCATCATAGGGGCTTTTCTCCTCCTCCTGACCCCTCCCTCTTCTTGAGTTAAGCTTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'31-23,'31-22,35-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0157116=GCV_T=FE(13.3=100)
A:
PF0157116=GCV_T=PD(25.2=90.2)
C2:
PF086696=GCV_T_C=WD(100=80.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCATGCTCTACATCCCC
R:
TCGGAGAAGTTGTGCACGAAG
Band lengths:
257-440
Functional annotations
There are 1 annotated functions for this event
PMID: 32249828
[CRISPR screen]. This alternative exon is implicated in cell fitness by a CRISPR-based exon deletion phenotypic screen in RPE-1 cells.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development