Special

GgaEX1042879 @ galGal3

Exon Skipping

Gene
ENSGALG00000002690 | F1NG59_CHICK
Description
NA
Coordinates
chr11:1756603-1758471:-
Coord C1 exon
chr11:1758382-1758471
Coord A exon
chr11:1757949-1758131
Coord C2 exon
chr11:1756603-1757198
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCCCTTCCTTTGCAGTAC
3' ss Score
9.8
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GAGATGAGTGTGGGCTACGCTAACGGCATCCGTGTGATGAGCATCACTCACACAGGAGAACCTGGATTCATGCTTTATATTCCCATCGAG
Seq A exon
TACGCCCTCCACGTGTACAACGAGGTGATGAACATGGGGCAGAAGTATGGGATCCGCAACGCCGGTTACTACGCGCTCCGCAGCCTGCGGATCGAGAAGTTTTTTGCCTTCTGGGGCCAGGATCTGGATGCCTTTACCACTCCTATGGAGTGTGGCCGTGAGTTCCAGGTCAAGCTGGAAAAG
Seq C2 exon
GGGATGGACTTCATTGGCCAGGAAGCTCTGTTGGAGCAGAAGCAGAACGGGGTGTACAAACGCTTCACCATGTTCATTCTCGAGGACCACGACACAGATATGGACCTCTGGCCCTGGTGGGGAGAACCCATCTTCCGCAACGGCCGCTACGTGGGCAAAACCACCAGCAGTGCCTACAGCTACACTCTGGAGCGCCACGTCTGCCTTGGCTTCGTGCAGCACTTCGACGAGAAGACAGGGGAGGAGCTGGTGGTGACAACTGACTTCATCAACCAGGGCGAGTACGAGATCGACATCGCCGGGCAGCGCTTCCAGGCCAAAGCCAAACTCTACCCCTTCAGCTCCCTCTTTGCTCAGCGTCGCCGCAAGGATGAGGTGGAACTGAGTGGCTACCAGAGGGAGTAGTGCTGGCTGGAGCCCCGCTCCTTTTCCCAGGCTGGAGTCTTCAGCTGCCACCTTCCAGTGCTCTCTCCGTGCCCCACACGTTTCTTTCTTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0157116=GCV_T=FE(13.4=100)
A:
PF0157116=GCV_T=PD(24.9=88.5)
C2:
PF086696=GCV_T_C=WD(100=80.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTCACACAGGAGAACC
R:
GCGCTCCAGAGTGTAGCTGTA
Band lengths:
245-428
Functional annotations
There are 1 annotated functions for this event
PMID: 32249828
[CRISPR screen]. This alternative exon is implicated in cell fitness by a CRISPR-based exon deletion phenotypic screen in RPE-1 cells.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]