GgaEX1042879 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1775734-1777411:-
Coord C1 exon
chr11:1777322-1777411
Coord A exon
chr11:1776889-1777071
Coord C2 exon
chr11:1775734-1776138
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCCCTTCCTTTGCAGTAC
3' ss Score
9.8
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GAGATGAGTGTGGGCTACGCTAACGGCATCCGTGTGATGAGCATCACTCACACAGGAGAACCTGGATTCATGCTTTATATTCCCATCGAG
Seq A exon
TACGCCCTCCACGTGTACAACGAGGTGATGAACATGGGGCAGAAGTATGGGATCCGCAACGCCGGTTACTACGCGCTCCGCAGCCTGCGGATCGAGAAGTTTTTTGCCTTCTGGGGCCAGGATCTGGATGCCTTTACCACTCCTATGGAGTGTGGCCGTGAGTTCCAGGTCAAGCTGGAAAAG
Seq C2 exon
GGGATGGACTTCATTGGCCAGGAAGCTCTGTTGGAGCAGAAGCAGAACGGGGTGTACAAACGCTTCACCATGTTCATTCTCGAGGACCACGACACAGATATGGACCTCTGGCCCTGGTGGGGAGAACCCATCTTCCGCAACGGCCGCTACGTGGGCAAAACCACCAGCAGTGCCTACAGCTACACTCTGGAGCGCCACGTCTGCCTTGGCTTCGTGCAGCACTTCGACGAGAAGACAGGGGAGGAGCTGGTGGTGACAACTGACTTCATCAACCAGGGCGAGTACGAGATCGACATCGCCGGGCAGCGCTTCCAGGCCAAAGCCAAACTCTACCCCTTCAGCTCCCTCTTTGCTCAGCGTCGCCGCAAGGATGAGGTGGAACTGAGTGGCTACCAGAGGGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'19-18,'19-17,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(13.4=100)
A:
PF0157116=GCV_T=PD(24.9=88.5)
C2:
PF086696=GCV_T_C=WD(100=80.7)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACTCACACAGGAGAACC
R:
GCGCTCCAGAGTGTAGCTGTA
Band lengths:
245-428
Functional annotations
There are 1 annotated functions for this event
PMID: 32249828
[CRISPR screen]. This alternative exon is implicated in cell fitness by a CRISPR-based exon deletion phenotypic screen in RPE-1 cells.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]