Special

BtaEX0026527 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13996342-13997590:-
Coord C1 exon
chr3:13997415-13997590
Coord A exon
chr3:13996648-13996752
Coord C2 exon
chr3:13996342-13996442
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGCTGATCCCTGCCTTGCAGTTT
3' ss Score
7.18
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AGACTTGCTCCTCCAGATCTGTGGCTACAGTGCCTCTCACCTGCTCTGCGCCTGGCCCTGTCACAGGGCCCTGCAATGTCACCACCCCTGCGGGCCCTCCTTCTCCTCGCCCTGGAGCTGGGGCTGGCTGCCACCCTCAACCCTAAGGACCCCAACACCTGCAGCTTCTGGGAAAG
Seq A exon
TTTCACCACCACTACCAAGGAGTCGCTCTCCCGCCCCTTCAGCCTGCTCCCCTCGGAGCCCTGCAGCCGGCCCTGGGAGAGCCCGCACACCTGCCCCCGGCCCAC
Seq C2 exon
TGTTGTCTACCGGACCGTGTACCGCCAAGTGGTGAAGACGGAGCACCGGATGCGGCTGCAGTGCTGCCGGGGCTTCTATGAGAGCCGCGGGGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'5-10,'5-9,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCCAGATCTGTGGCTA
R:
CTCTCATAGAAGCCCCGGCAG
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development