BtaEX0026527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13996342-13997590:-
Coord C1 exon
chr3:13997415-13997590
Coord A exon
chr3:13996648-13996752
Coord C2 exon
chr3:13996342-13996442
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGCTGATCCCTGCCTTGCAGTTT
3' ss Score
7.18
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AGACTTGCTCCTCCAGATCTGTGGCTACAGTGCCTCTCACCTGCTCTGCGCCTGGCCCTGTCACAGGGCCCTGCAATGTCACCACCCCTGCGGGCCCTCCTTCTCCTCGCCCTGGAGCTGGGGCTGGCTGCCACCCTCAACCCTAAGGACCCCAACACCTGCAGCTTCTGGGAAAG
Seq A exon
TTTCACCACCACTACCAAGGAGTCGCTCTCCCGCCCCTTCAGCCTGCTCCCCTCGGAGCCCTGCAGCCGGCCCTGGGAGAGCCCGCACACCTGCCCCCGGCCCAC
Seq C2 exon
TGTTGTCTACCGGACCGTGTACCGCCAAGTGGTGAAGACGGAGCACCGGATGCGGCTGCAGTGCTGCCGGGGCTTCTATGAGAGCCGCGGGGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405-'5-10,'5-9,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCCAGATCTGTGGCTA
R:
CTCTCATAGAAGCCCCGGCAG
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development