GgaEX1042989 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:410125-410741:-
Coord C1 exon
chr25:410649-410741
Coord A exon
chr25:410467-410571
Coord C2 exon
chr25:410125-410225
Length
105 bp
Sequences
Splice sites
3' ss Seq
CATGCCCTCTCCCCCAACAGTTT
3' ss Score
10.71
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGGTGCTGAGGACTGTGGCACTGGCACTGCACGCCTGCCTCCTGGCTGCCCTCCACCCCAGCGACCCCAACGTCTGCAGCTACTGGGAGAG
Seq A exon
TTTTACAGTAGCAGTGAAGGAGTCATACGCCAAACCCCACATTGTGACCTCCACCGAGCCCTGCACTGGGACACCAGGATTGCCACAGTCCTGCCCGCAGCAAAG
Seq C2 exon
GGTTGTGTACCGCACGGAGTACCGACAGGCGGTGCGCACCGACTACCGCCGGCGCTACCAGTGCTGCCTGGGCTACTATGAGAGCAGGGACGCCTGCGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGAGGACTGTGG
R:
GGCGTCCCTGCTCTCATAGTA
Band lengths:
187-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]