MmuEX6071808 @ mm9
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87563016-87564310:-
Coord C1 exon
chr3:87564146-87564310
Coord A exon
chr3:87563399-87563503
Coord C2 exon
chr3:87563016-87563116
Length
105 bp
Sequences
Splice sites
3' ss Seq
GACCTCTTCTCAACCCACAGCTT
3' ss Score
8.31
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CAGATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTTTGTTACCGTGTGCCCTATCGCAGGCCTCTGCAATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATCCCAATGTCTGTACCTTTTGGGAAAG
Seq A exon
CTTCACCACGACCACTAAGGAGTCCCACCTGCGCCCCTTCAGCCTGCTCCCAGCTGAGTCCTGCCACAGGCCCTGGGAGGACCCCCACACCTGTGCCCAGCCTAC
Seq C2 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTAGGGGTTACTACGAGAGCAGAGGGGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'5-8,'5-7,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(12.2=28.1)
A:
PF075468=EMI=FE(47.3=100)
C2:
PF075468=EMI=PD(39.2=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTGTCCTTCCGGCTG
R:
GCCCCTCTGCTCTCGTAGTAA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: