RnoEX6010114 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187124307-187125506:-
Coord C1 exon
chr2:187125345-187125506
Coord A exon
chr2:187124695-187124799
Coord C2 exon
chr2:187124307-187124407
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCCTGACCTGTTCCCACAGCTT
3' ss Score
9.66
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTCTGTTGTTGGGTGCCCTGTGGCAGGCTTGTGCAATGCCACTCTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGGCTGGAACACTCAACTCCAATGATCCCAATGTCTGTACCTTCTGGGAAAG
Seq A exon
CTTCACCACGACCACTAAGGAGTCCCACCTTCGCCCCTTCAGCCTGCCCCCAGCCGAGTCCTGCGACAGGCCCTGGGAAGACCCCCACACCTGCGCTCAGCCTAC
Seq C2 exon
GGTTGTCTACCGGACTGTGTACCGTCAGGTGGTGAAGATGGACTCCCGCCCACGCCTGCAGTGCTGTGGGGGTTACTACGAGAGCAGTGGAGCCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-'7-6,'7-4,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(12.2=28.1)
A:
PF075468=EMI=FE(47.3=100)
C2:
PF075468=EMI=PD(39.2=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTCCTTCCGGCTGCT
R:
GGCTCCACTGCTCTCGTAGTA
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]