BtaEX0027089 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35902997-35912334:+
Coord C1 exon
chr15:35902997-35903119
Coord A exon
chr15:35904185-35904352
Coord C2 exon
chr15:35912259-35912334
Length
168 bp
Sequences
Splice sites
3' ss Seq
AATACATTTCCCCCCCATAGAAT
3' ss Score
9.21
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
TTATGAAAAATACTACTTGGTATGTTCCCTGACTTACAATGGAAAGGATCTTTTTAAACCTATTCAATCAAAGAAGGTTGGCACTTATAAGAATTTCTTCTATCTTATTAAATGGGATGAACT
Seq A exon
AATCATTTTTCCCATCCAGATATCACAATTGCCGTTAGAATCACTTCTTCACCTTACTCTTTTTGGAATTTTAAATCAGAGCAGTGGAAGTTCCCCTGATTCTAATAAGCAGAGAAAAGGGCCAGAAGCTTTGGGCAAAGTTTCTTTACCTCTTTTTGACTTTAAACG
Seq C2 exon
GTTTTTAACATGTGGAACTAAGCTTCTGTATCTTTGGACTTCATCACATACAAATCTTATTCCTGGAACAGTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901-'18-24,'18-21,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(33.9=97.6)
A:
PF0079219=PI3K_C2=FE(46.3=100)
C2:
PF0079219=PI3K_C2=PD(19.0=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATACTACTTGGTATGTTCCC
R:
GGGGACTGTTCCAGGAATAAGA
Band lengths:
196-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development