DreEX6065830 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27060155-27061897:+
Coord C1 exon
chr18:27060155-27060277
Coord A exon
chr18:27060416-27060583
Coord C2 exon
chr18:27061789-27061897
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTTAGAAT
3' ss Score
12.07
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
TTTTGAAAAATACTACCTGATGTGTGCCCTGACCCATAACAACAGGAATCTCTTCAAACCTGTCCAGTCCAAAAAAGTGGGAACATACAAGAGTTTCTTCTACCACATCAAATGGGATGAATT
Seq A exon
AATAAACTTCCCTATTTCAGTGTCGCTGTTACCACTGGAGGCTATGCTTAGTCTTTCTCTCTATGGGGTCCTCAGTCAGAATGCAAACAACTCACCAGATTCCAACAAGCAACGGAAAGGTCCAGAACTTTTGGGAAAAGTTTCCATGCCTCTGTTTGACTTCAGGAG
Seq C2 exon
GGTTCTGTCCAGAGGCAGTAAACTGCTGAGTTTGTGGACTTCTCCTCAAGCCCTTCAGCCTGGAGCTGCAGGCAAAGGGAGGAATCCTACAGAAAAGATCATACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-'15-18,'15-16,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.135
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.5=97.6)
A:
PF0079219=PI3K_C2=FE(40.3=100)
C2:
PF0079219=PI3K_C2=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATACTACCTGATGTGTGCCCT
R:
CTGCAGTATGATCTTTTCTGTAGGA
Band lengths:
226-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]