GgaEX1043786 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12861429-12865735:-
Coord C1 exon
chr5:12865613-12865735
Coord A exon
chr5:12863723-12863890
Coord C2 exon
chr5:12861429-12861537
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCAACACTTTTATTTTATAGAAT
3' ss Score
7.9
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
TTTTGAGAAATACTACTTGATTTGTTCTTTGACCCATAATGGAAAAGATCTCTTCAAACCTGTTCAGTCCAAGAAGGCTGGCGCATACAAGAACTTCTTCTACTTGATTAAATGGGATGAACT
Seq A exon
AATAATTTTCCCCATCCAGATTTCACAACTGCCTTTGGAATCAGTCTTATGTCTGACTTTGTTTGGAATCCTAAATCAAAGTAGTGGAAGTTCTCCTGATTCAAATAAGCAGAGAAAGGGCCCTGAAATGTTGGGTCAGGTTTCTTTACCTCTTTTTGATTTTAGGCG
Seq C2 exon
ATTGCTATCTTGTGGGACAAAGCTCCTGCAACTCTGGACTTCATTACATCCGAGTCATGCTTCAGGGACGGCCAGTAAGAAAGAAAATATGGGAAGAATAGTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.054
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.3=97.6)
A:
PF0079219=PI3K_C2=FE(40.0=100)
C2:
PF0079219=PI3K_C2=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTTGATTTGTTCTTTGACCCA
R:
TGCAGTACTATTCTTCCCATATTTTC
Band lengths:
220-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]