RnoEX6004462 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185294489-185297636:+
Coord C1 exon
chr1:185294489-185294611
Coord A exon
chr1:185295473-185295640
Coord C2 exon
chr1:185297525-185297636
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTGCTCCACAGAAT
3' ss Score
11.05
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TTACGAAAAATACTACTTGATATGTTCCCTGTCTCACAATGGGAAGGATCTTTTTAAGCCTATTCAGTCAAAGAAGGTTGGCACATACAAGAATTTCTTCTATCTTATCAAATGGGATGAACT
Seq A exon
AATCATTTTCCCTATCCAGATATCGCAGTTGCCTTTAGAGTCAGTTCTTCATCTCACTTTGTTTGGAGTTTTAAATCAGAGCAGTGGAAGTTCCCCTGATTCTAATAAACAGAGAAAGGGGCCAGAAGCTCTGGGCAAAGTCTCTTTAACTCTATTTGACTTTAAACG
Seq C2 exon
GTTTTTAACATGTGGAACTAAACTTCTCTACCTTTGGACTTCATCACATACAAATTCTATTCCTGGAGCAATCCCCCAAAAAAGCTATGTCATGGAAAGAATTGTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(29.1=97.6)
A:
PF0079219=PI3K_C2=FE(39.7=100)
C2:
PF0079219=PI3K_C2=FE(26.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTACTTGATATGTTCCCTGTCTC
R:
CTGTAGCACAATTCTTTCCATGACA
Band lengths:
226-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]