BtaEX0027199 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98607409-98609062:-
Coord C1 exon
chr11:98608859-98609062
Coord A exon
chr11:98607648-98607698
Coord C2 exon
chr11:98607409-98607444
Length
51 bp
Sequences
Splice sites
3' ss Seq
CGCTTTGCTCCTTGCTGCAGGGG
3' ss Score
9.34
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATCCTGGCCCCCTCCCCAGAGGCTGGACGCAGAGCAGCTGCTTCAAGCTCTGGCCACCGTGGCCTCCTCTGGCGTCTGCGGGACAAGCAGTGTCGCCTGGGACTGTTTGAGATCGGCCCGGGGCACGAGCTGCACCAGGTGATGTGCCTGATGCAGGCGGGGCTGTGGGCTGCCACTCAAGTGTCCATGGACCACCCGCCCACG
Seq A exon
GGGCTGCCCACGGAGGAGGATTTTTCTGAAGTCCTGACCCAGGTTCATGAG
Seq C2 exon
GGCTTCGAGCTGGGCACCTTGGCTGGCCCCGTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.471 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGGACTGTTTGAGATC
R:
CAAGGTGCCCAGCTCGAAG
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development