RnoEX0002972 @ rn6
Exon Skipping
Gene
ENSRNOG00000048676 | AABR07051445.1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:NCBI gene;Acc:687758]
Coordinates
chr3:11593655-11595305:+
Coord C1 exon
chr3:11593655-11593870
Coord A exon
chr3:11594913-11594966
Coord C2 exon
chr3:11595151-11595305
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTCTACCAACCCCTGCAGGGA
3' ss Score
8.49
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTGTCTTCCCATCAGATCCCGTCCCACTCCCTGGATGTTGGAAACAGGTCCACTTCCTCAGGGAGCCGCCGTGGCCTCTTTTGGCACCTCCGAGCCAAGCATTCTAGAGTTGGCCTGTTTGAGATCGGTCCAGGACACGAACTGCATAGAATGACACGGATGATGCAGGAAGGGCTGTGGGCTGCCACCCAGGTCTCCATGAACAACCCACCCACG
Seq A exon
GGACCTCCTACCCAGAAGGATTTCCTGGAAGTCATGACCCAGGTTCACAAAGAG
Seq C2 exon
GGCTTCGAACTGGGCACCCTGGCTGGTCCAGCTTTTGCACGGCTGAGGCAATCCATTGGCCTGACTGAAGAAGACTACCAGGCTACTCTTGGCCCTGGTGACCCCTACCTTCAATTCCTCAGCACCTCCAAGAGCAAGGCCAGCTTCTTCCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048676_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0150413=PIP5K=PU(13.3=46.2)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGATGATGCAGGAAGG
R:
TCAGTCAGGCCAATGGATTGC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]