DreEX0055713 @ danRer10
Exon Skipping
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31103142-31109826:-
Coord C1 exon
chr5:31109632-31109826
Coord A exon
chr5:31103439-31103489
Coord C2 exon
chr5:31103142-31103296
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTGTTTTATTTTTAGGAT
3' ss Score
11.54
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
ATGGAGATGTCAGGGCCGAGTGTGAACCGCCGCAGTCGCACGGTGAAGAGGCGACGGTGGGGAGGACTGAGGCAGCAATGGAAACTGCTGGGTCTGTTTGAGATCGACCAAGAGCATGAGTTTCACAGTCTCACCTGCATGATGAAGGAAGGGCTGCGTGCTGCTGTGCAGAACACCATTGACAACCCTTTACCT
Seq A exon
GATGAGCTGTGTGAGGATGACTACAGTCTTGAGGTTACTCAAATCCATAAG
Seq C2 exon
GACTTCAGGATGGAGACATACGCGGGGCCGGTGTTTGCAAGTCTGCGTCGTTCTTTGGGAATGACGGAGAAGGAGTATCAGCAGTCGCTCTCCTCTGAAGGCTGTTACCTGCAATTCATCAGCAACTCTAAGAGCAAGGCAGATTTCTTCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0150413=PIP5K=PU(7.1=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGATGAAGGAAGGGCTG
R:
ACTCCTTCTCCGTCATTCCCA
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]