HsaEX0047717 @ hg38
Exon Skipping
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase like 1 [Source:HGNC Symbol;Acc:HGNC:28711]
Coordinates
chr9:127928065-127929885:-
Coord C1 exon
chr9:127929688-127929885
Coord A exon
chr9:127928433-127928483
Coord C2 exon
chr9:127928065-127928219
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCCTCTACCTCTCCCTGCAGGGG
3' ss Score
12.25
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCCTGGCCCCCTCCCCTGAGGCTGGATGCAGAGCAGTCACCTCCAGCCGGCGGGGGCTTCTCTGGCGCCTCCGAGACAAGCAGTCTCGCCTGGGCCTGTTTGAGATCAGCCCGGGGCATGAACTGCATGGGATGACGTGCATGATGCAGGCAGGGCTGTGGGCTGCCACCCAGGTCTCCATGGACCACCCACCCACG
Seq A exon
GGGCCGCCCTCCCGGGACGATTTCTCGGAGGTCCTAACCCAGGTTCACGAG
Seq C2 exon
GGCTTCGAGCTGGGCACGCTGGCCGGCCCCGCCTTTGCCTGGCTGCGCCGCTCCCTGGGCCTGGCGGAGGAGGACTATCAGGCTGCCCTGGGCCCCGGCGGCCCCTACCTGCAGTTCCTCAGCACCTCCAAGAGCAAGGCCAGCTTCTTCCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-'2-5,'2-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.588 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0150413=PIP5K=PU(8.1=42.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGCAGGCAGGGCTG
R:
CTGATAGTCCTCCTCCGCCAG
Band lengths:
139-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development