BtaEX0027298 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017037 | PKN1
Description
Bos taurus protein kinase N1 (PKN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080246]
Coordinates
chr7:12403718-12404336:-
Coord C1 exon
chr7:12404274-12404336
Coord A exon
chr7:12404054-12404130
Coord C2 exon
chr7:12403718-12403860
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCTTCCACCCCCTCTCACAGGGA
3' ss Score
9.26
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTTTTATTCGGCCTGTGTGGTGCTGGGGCTGCAGTTTCTCCACGAACACAAGATTGTCTACAG
Seq A exon
GGACCTGAAGTTGGACAATTTGCTTCTGGACACTGAGGGCTATGTCAAGATTGCAGACTTTGGCCTCTGCAAGGAGG
Seq C2 exon
GGATGGGCTATGGAGACCGGACCAGCACTTTCTGTGGGACCCCAGAGTTCCTGGCACCTGAGGTGCTGACGGACACGTCGTACACTCGTGCGGTGGACTGGTGGGGACTGGGCGTGTTGCTCTATGAAATGCTGGTTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017037_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTTTCTCCACGAACA
R:
GCATTTCATAGAGCAACACGCC
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development