DreEX6032869 @ danRer10
Exon Skipping
Gene
ENSDARG00000060184 | pkn1a
Description
protein kinase N1a [Source:ZFIN;Acc:ZDB-GENE-061207-17]
Coordinates
chr1:45137459-45139274:+
Coord C1 exon
chr1:45137459-45137521
Coord A exon
chr1:45138947-45139023
Coord C2 exon
chr1:45139132-45139274
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTTGTCTTCCAGAGA
3' ss Score
10.32
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTTTATTCTGCTTGTGTAGTTTTAGGGCTTCAGTTTTTACATGACAACAAGATTGTGTACCG
Seq A exon
AGATCTTAAATTAGACAACTTGCTGCTTGACACAGAGGGTTATGTGAAGATTGCCGACTTTGGATTGTGTAAAGAAG
Seq C2 exon
GTATGGGTTTTGGGGACCGGACCAGTACGTTCTGCGGGACTCCAGAGTTTCTGGCTCCAGAGGTTTTGACAGACACATCGTACACCCGTGCTGTGGACTGGTGGGGTCTCGGAGTGCTTATATATGAAATGTTGGTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060184-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTTGTGTAGTTTTAGGGCT
R:
ATAAGCACTCCGAGACCCCAC
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]