RnoEX0066429 @ rn6
Exon Skipping
Gene
ENSRNOG00000004131 | Pkn1
Description
protein kinase N1 [Source:RGD Symbol;Acc:69308]
Coordinates
chr19:24804705-24805376:-
Coord C1 exon
chr19:24805314-24805376
Coord A exon
chr19:24805124-24805200
Coord C2 exon
chr19:24804705-24804847
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCTGACACCCCATTCCCCAGGGA
3' ss Score
6.05
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTTCTATTCGGCCTGTGTGGTGCTGGGACTGCAGTTCCTCCATGAACACAAGATTGTCTACAG
Seq A exon
GGACCTGAAGTTGGACAATTTGCTCCTGGATACTGAGGGCTACGTCAAGATCGCAGACTTTGGCCTCTGCAAGGAGG
Seq C2 exon
GGATGGGCTATGGGGACCGGACCAGCACATTCTGCGGAACTCCGGAGTTCCTGGCGCCGGAAGTGCTCACAGACACATCCTACACTCGAGCCGTGGACTGGTGGGGACTGGGTGTATTGCTCTATGAGATGCTGGTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004131_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.1=100)
A:
PF0006920=Pkinase=FE(10.0=100)
C2:
PF0006920=Pkinase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATTCGGCCTGTGTGGTG
R:
AATACACCCAGTCCCCACCAG
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]