BtaEX0027304 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55257315-55267461:-
Coord C1 exon
chr3:55267352-55267461
Coord A exon
chr3:55257714-55257857
Coord C2 exon
chr3:55257315-55257390
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTAATTATTCTAGTCA
3' ss Score
6.62
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGATGTCTGTGCAGTTTTGAAGCTGGACAATACTGTGGTTGGTCAAACTAGCTGGAAACCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
Seq A exon
TCACGTGAACTGGAAATTTCAGTTTATTGGCGTGATTGGCGATCTCTGTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAACGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACTTTATTTGCAGAG
Seq C2 exon
GTTACCTTTTTTAATCCAGTTATTGAAAGAAGACCAAAACTCCAAAGACAAAAGAAAATTTTTTCCAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGCAGTTTTGAAGCTGG
R:
TTTCTTTTGTCTTTGGAGTTTTGGT
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development