GgaEX7006859 @ galGal4
Exon Skipping
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14125672-14127703:-
Coord C1 exon
chr8:14127594-14127703
Coord A exon
chr8:14125889-14126032
Coord C2 exon
chr8:14125672-14125747
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCTTGCTGTCATAGTCA
3' ss Score
6.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
Seq A exon
TCACGTGAATTGGAAATCTCAGTTTATTGGCGTGACTGGAGATCCCTGTGTGCAGTGAAGTTTCTGAGGCTGGAAGATTTCCTGGACAACCAACGGCATGGCATGTGTCTGTATCTTGAGCCCCAGGGCACTCTGTTTGCAGAG
Seq C2 exon
GTCACGTTTTTTAATCCAGTTATTGAAAGAAGACCAAAACTTCAGAGACAGAAGAAAATTTTTTCCAAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237-'11-12,'11-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000010087fB10631
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTGTGCTGTACTGAAGCTG
R:
TCTTCTGTCTCTGAAGTTTTGGTCT
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]