DreEX6021830 @ danRer10
Exon Skipping
Gene
ENSDARG00000101293 | PKN2 (1 of 2)
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr6:25338495-25342734:-
Coord C1 exon
chr6:25342625-25342734
Coord A exon
chr6:25338672-25338815
Coord C2 exon
chr6:25338495-25338570
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGGTTGGCCTTTAGTCT
3' ss Score
5.31
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
ATGAAATCAGTGCCGTTCTAAAGTTGGACAACACAGTTGTGGGACAGACCCATTGGAAGCCAGTTAGCAACCAATCTTGGGACCAGAAGTTCACGCTGGAACTTGACCGG
Seq A exon
TCTCGTGAGCTGGAGATTGCTGTGTATTGGAGAGACTGGCGCTCGCTGTGTGCAGTGAAGTTTTTACGTCTAGAGGACTTCCTGGATAACCAACGGCACGGCATGTGCCTCTACCTGGAACCACAAGGAACACTGTTTGCCGAG
Seq C2 exon
GTTACATTTTTTAACCCAGTCATTGAGAGGCGACCCAAACTACAAAGACAAAAGAAAATCTTCTCCAAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101293-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATCAGTGCCGTTCTAAAGT
R:
CTTGCTGTTTGGAGAAGATTTTCT
Band lengths:
186-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]