RnoEX0066446 @ rn6
Exon Skipping
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248759920-248770334:-
Coord C1 exon
chr2:248770225-248770334
Coord A exon
chr2:248760278-248760421
Coord C2 exon
chr2:248759920-248759995
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTAATTATCTTAGTCA
3' ss Score
5.91
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTATCTGGAAGCCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
Seq A exon
TCACGTGAACTGGAAATTTCAGTTTATTGGCGTGATTGGAGATCTCTGTGTGCTGTAAAATTTCTGAGGTTAGAAGATTTTTTAGACAACCAGCGGCATGGCATGTGTCTCTATTTGGAACCACAGGGTACTTTGTTTGCAGAG
Seq C2 exon
GTTACTTTTTTTAATCCAGTTATTGAAAGACGACCAAAACTCCAAAGACAAAAGAAAATTTTTTCAAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTTGTGCTGTTTTGAAGCT
R:
TTTTGTCTTTGGAGTTTTGGTCGT
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]