BtaEX0027691 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001353 | PMPCA
Description
Bos taurus peptidase (mitochondrial processing) alpha (PMPCA), mRNA. [Source:RefSeq mRNA;Acc:NM_001076964]
Coordinates
chr11:103917885-103921387:+
Coord C1 exon
chr11:103917885-103918087
Coord A exon
chr11:103918514-103918593
Coord C2 exon
chr11:103921287-103921387
Length
80 bp
Sequences
Splice sites
3' ss Seq
AATTTTCTTTTTATTACCAGTTC
3' ss Score
6.91
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GTTTGGAGACCCCGCATACAGACGGTTCAGCAGTGGTGGGGCCTACCCCAACATCCCCCTCTCTTCCCCCTTGCCGGGAGTACCCAAGCCTGTTTTTGCTACAGTTGACGGACAAGAAAAGTTTGAAACCAAAGTTACCACACTGGACAATGGACTCCGTGTGGCATCCCAGAATAAGTTTGGACAGTTCTGTACAGTCGGGA
Seq A exon
TTCTTATTAACTCTGGATCAAGATACGAAGCGAAATATCTTAGTGGAATTGCTCACTTTTTGGAAAAATTGGCATTTTCG
Seq C2 exon
ACGAGGAAATTGAGATGGCGCGCATGGCTGTGCAGTTTGAGCTGGAGGACCTCAACATGCGGCCCGACCCGGAGCCGCTCCTCACCGAGATGGTTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001353_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=PU(9.9=21.7)
A:
PF0067515=Peptidase_M16=FE(17.2=100)
C2:
PF0067515=Peptidase_M16=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCCAACATCCCCCTCTC
R:
GCGCCATCTCAATTTCCTCGT
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development