MmuEX6099725 @ mm9
Exon Skipping
Gene
ENSMUSG00000026926 | Pmpca
Description
peptidase (mitochondrial processing) alpha [Source:MGI Symbol;Acc:MGI:1918568]
Coordinates
chr2:26245456-26246097:+
Coord C1 exon
chr2:26245456-26245658
Coord A exon
chr2:26245751-26245830
Coord C2 exon
chr2:26246015-26246097
Length
80 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTTTTTATTACCAGTTC
3' ss Score
7.61
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GTTTGGATCTCCTGCACACAGACGGTTCAGCAGTGGTGCCACCTACCCCAACATCCCCCTCTCTTCTCCCTTGCCTGGAGTACCCAAGCCTATTTTTGCAACAGTTGATGGACAGGAAAAGTTTGAAACCAAAGTTACCACTCTGGACAATGGGCTTCGTGTGGCATCTCAAAATAAGTTTGGACAATTCTGTACCGTAGGAA
Seq A exon
TTCTTATTAATTCAGGATCACGATATGAAGCGAAATATCTTAGTGGAATAGCTCATTTTTTGGAAAAATTGGCATTTTCG
Seq C2 exon
TCCACTGCTCGATTTGACAGCAAAGACGAAATCCTGCTTACGCTGGAAAAACATGGTGGTATCTGTGACTGCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026926-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=PU(9.9=21.7)
A:
PF0067515=Peptidase_M16=FE(17.2=100),PF109053=DUF2695=PU(10.0=11.1)
C2:
PF0067515=Peptidase_M16=FE(17.9=100),PF109053=DUF2695=PD(83.3=89.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACATCCCCCTCTCTTCT
R:
GCTGTCAAATCGAGCAGTGGA
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: