RnoEX6015976 @ rn6
Exon Skipping
Gene
ENSRNOG00000026775 | Pmpca
Description
peptidase, mitochondrial processing alpha subunit [Source:RGD Symbol;Acc:727897]
Coordinates
chr3:3834863-3835507:+
Coord C1 exon
chr3:3834863-3835065
Coord A exon
chr3:3835158-3835237
Coord C2 exon
chr3:3835425-3835507
Length
80 bp
Sequences
Splice sites
3' ss Seq
AATTTTCTTTCTGTTACCAGTTC
3' ss Score
7.8
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GTTCGGTTCTCCTGCACACAGACGGTTCAGCAGTGGCGCCACCTACCCCAACATCCCTCTCTCTTCTCCCTTGCCCGGAGTGCCCAAGCCTATTTTTGCTACAGTTGATGGACAGGAAAAGTTTGAAACCAAAGTCACCACTCTGGACAATGGGCTTCGTGTGGCATCTCAAAATAAGTTTGGACAGTTCTGTACCTTAGGAA
Seq A exon
TTCTTATTAATTCAGGATCACGATATGAAGCGAAATATCTTAGTGGAATTGCTCATTTTCTGGAAAAATTGGCATTTTCG
Seq C2 exon
TCTACCGCTCGATTTGACAGCAAAGATGAAATTCTGCTTACCCTGGAAAAACATGGTGGTATCTGTGACTGCCAGACCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026775-'5-2,'5-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=PU(9.9=21.7)
A:
PF0067515=Peptidase_M16=FE(17.2=100)
C2:
PF0067515=Peptidase_M16=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCTCTCTTCTCCCTTGC
R:
TTTGCTGTCAAATCGAGCGGT
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]