DreEX0056601 @ danRer10
Exon Skipping
Gene
ENSDARG00000102607 | pmpca
Description
peptidase (mitochondrial processing) alpha [Source:ZFIN;Acc:ZDB-GENE-030131-5809]
Coordinates
chr5:64354487-64355602:+
Coord C1 exon
chr5:64354487-64354689
Coord A exon
chr5:64355360-64355439
Coord C2 exon
chr5:64355520-64355602
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTCACCCTTTTGTTTTTAGTCT
3' ss Score
9.15
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTATGGCATCGCAGTATGTCGACAGTACAGCAGCGGCAGCTCGTATCCCAATGTATCTCTGTCCACACCGCTGCCCGGCATCCCCAAACCTGTCTTCGCCTCAGTGGACGGACATGAGAAATACGAGACTAAAATCACCACATTAGAAAACGGACTCAAAATTGCATCGCAGAACAAGTTTGGGCAGTTCTGTACAGTTGGAA
Seq A exon
TCTTGGTAAACTCAGGTTCACGTCATGAAGCAAAGTATCCCAGTGGAATTGCACACTTTTTGGAAAAGCTTTCCTTTTCT
Seq C2 exon
TCTACAGCCCAGTTCGGAAGTAAAGACGAAATTCTGCTGACACTTGAGAAACATGGAGGGATATGTGACTGCCAAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102607_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=PU(9.9=21.7)
A:
PF0067515=Peptidase_M16=FE(17.2=100)
C2:
PF0067515=Peptidase_M16=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCTCTGTCCACACCGCT
R:
ACTTCCGAACTGGGCTGTAGA
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]