BtaEX0027738 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105627381-105643146:+
Coord C1 exon
chr11:105627381-105627527
Coord A exon
chr11:105641216-105641293
Coord C2 exon
chr11:105642941-105643146
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCCTGTGTTTCCGTTTCTAGGAC
3' ss Score
13.85
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCAAGAAGAGTGTGGTTGTTGCAGAGACCCCATCGGCTGTCCTCCCCAACTCGGACGGTACCTTGGACGAGTCTGTCACCAGCAAGAAGACAGACTCCATCCTCAGAGCCGCCACACAGGACCTGCTCACCCTGATGAAGCTGGAT
Seq A exon
GACCCTTCGCTGTTAGATGGCCGGGTGGCGCTTCTCCACGTCCCAGGGGGCACGGTGGTGTTGAGGCAGGGAGACCAG
Seq C2 exon
GACACGAGCATCCTCTTCGTGGTCTCGGGGCTGCTGCATGTGTACCAGCGGAAGATTGACAGCGAGGAGGACACGTTCCTGTTCATGGCACGGCCCGGTGAGATGGTGGGCCAGCTGGCGGTGCTCACGGGCGAGCCCCTCATCTTCACCATCAGGGCCAACCGGGACTGCAGCTTCCTGTCCATCTCCAAGGCGCACTTCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(16.3=57.7)
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCACCCTGATGAAGCTG
R:
TGATGGTGAAGATGAGGGGCT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development