GgaEX6014815 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1609024-1614011:+
Coord C1 exon
chr17:1609024-1609182
Coord A exon
chr17:1612892-1612969
Coord C2 exon
chr17:1613806-1614011
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTCCATCCTTTTCTCCAGGAT
3' ss Score
10.12
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCGATATTGAAGAAGACTGTGACAGTGACAAGAACCCCTTCAGTAGTTTTCCGTTACACTGATTGTGAGCTGACTGCACAGGAATCCTGTAATGGCAAACCCACCGATGCCATCTTCGAAGCAGCGAAGAAAGACCTTTCAACCCTGATGAAACTTGAT
Seq A exon
GATCCTTCCCTGCTGAATGACAGAGTGACACTGCATCAGGTTACTGCTGGGACTGTGCTGTCAAGGCAGGGAGATCAG
Seq C2 exon
GATGTTAATGTTTGCTTTGTGGTCTCCGGGATGCTTCACGTGTACCAACAGAAGGTCGACTCCGAGGAGGACACCTGCCTGTTCATTACTCACCCAGGAGAACTCGTGGGCCAGCTTGCTGTTCTCACTGGGGAACCACTGATTTTCACCATCAAGGCCAATCGAGACTGTAGCTTCCTGTCTATTTCCAAGTCCCACTTCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(16.3=57.7)
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCAGCGAAGAAAGACCT
R:
AGTGGTTCCCCAGTGAGAACA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]