DreEX6010743 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24556432-24559088:-
Coord C1 exon
chr5:24558933-24559088
Coord A exon
chr5:24556722-24556799
Coord C2 exon
chr5:24556432-24556637
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATTAATTTTTACACACTAGGAT
3' ss Score
5.89
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TCAAACCGGAAGAAGTCTGTGACAATGCATCATTCTCCTTCAGCCGTGTTTCACTACTCGGACACCGGAGGGCACTCCAGCCACATCCACCATAGTAAAGTTAATGCCATTTTCCAAGCTGCCAAGAGGGACCTGCTAAAGATTATCCAACTCCAG
Seq A exon
GATCCCAATCTTCTGGAAGATCGGGTGACACTGAGACAAGTAAAGGCGGGCTCTGTGGTTGCAAGTGAGGGAGATCAG
Seq C2 exon
GATGTAAGCGTGCAGTTTGTCATCTCTGGAACGCTTCATGTGTACCAGAGACTGATTGACAGAGAAGAGCAATCATGTCTGTTTGTGGCCCACCCTGGAGAGATGGTGGGCCACCTGGCTGTTCTCACTGGAGAGCCTCTCATCTTTTCTGTGCGCGCCCAGCGTGACTGCTGCTTCCTGTCTATCTCCAAAACACACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'18-20,'18-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(16.3=57.7)
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCCACATCCACCATAGT
R:
GTGGGCCACAAACAGACATGA
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]