MmuEX1029122 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25002889-25011711:+
Coord C1 exon
chr2:25002889-25003032
Coord A exon
chr2:25010714-25010791
Coord C2 exon
chr2:25011506-25011711
Length
78 bp
Sequences
Splice sites
3' ss Seq
AAATCTGTTCTGTGTTTTAGGAC
3' ss Score
11.45
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TCCAAGAAAAGTGTTGTCGCAGAGACCCCCTCTGCCATCTTCCACTACTCAGAAAATTTCAGGGATGAGACTGGGGCCTGTGGGAAGACAGATGCTATCTTCAGAGCTGCCACAAAGGACCTCCTTACCCTGATGAAGCTAGAT
Seq A exon
GACCCATCCCTGTTGGATGGCCGGGTGGCATTTCTTCATGTTCCTGCAGGCACCTTAGTGTCAAAACAGGGAGATCAG
Seq C2 exon
GATGTCAATATTTTGTTTGTGGTCTCGGGGATGCTGCATGTGTACCAGCAAAAGATTGACAGCTTGGAGGATACTTGCCTGTTCCTCACACATCCCGGGGAGATGGTGGGTCAGCTGGCGGTGCTCACTGGAGAACCCCTAATGTTCACCATCAGAGCCAACCGAGACTGCAGCTTTTTGTCCATCTCGAAGGCCCACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'31-31,'31-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(16.3=57.7)
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTGCCATCTTCCACTA
R:
TTTGCTGGTACACATGCAGCA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types