BtaEX0027750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105661639-105669780:+
Coord C1 exon
chr11:105661639-105661757
Coord A exon
chr11:105667678-105667834
Coord C2 exon
chr11:105669664-105669780
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTCCTGTCGGTGTAGAGG
3' ss Score
5.94
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGAGCTGTACGAGCGGGTTTGCCAGAGGCCCCCGGACCGGCACTCGGACTTCTCCCGCCTGGCAAGAGTGCTGACCGGCAATGCCATCGCCTTGGTCCTTGGGGGAGGGGGAGCAAG
Seq A exon
AGGCTGCGCGCAGGTGGGCATCATCCGGGCTCTGACGGAGTACGGCATCCCCGTGGACATGGTTGGAGGGACGTCCATCGGGGCCTTCATGGGCGCCCTGTACTCGGAGGAACGCAGCTACAGCCAGATCCGCATCCGGGCCAAGCAGTGGGCGGAG
Seq C2 exon
GACATGATGTCGATGGTGAAGACCATGCTGGACCTGACCTACCCCATCACTTCCATGTTCTCGGGGGCTGGCTTCAACAGCAGCATCTCTAGCGTCTTCAAGGACAGGCAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126_MULTIEX3-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
PF0173417=Patatin=FE(31.1=100)
C2:
PF0173417=Patatin=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGAGCGGGTTTGCC
R:
ATCTGCCTGTCCTTGAAGACG
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development