RnoEX0067755 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2250555-2257921:+
Coord C1 exon
chr3:2250555-2250673
Coord A exon
chr3:2255672-2255828
Coord C2 exon
chr3:2257805-2257921
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTTATTGGTGAAGAGG
3' ss Score
1.37
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTTGAGATGTACACACGCATTTTCCAACGACCACCAGACCGTCATTCCGACTTTTCCCGCCTGGCCCGGATCCTGACAGGCAATGCCATTGCCTTGGTGCTTGGAGGGGGTGGAGCCAG
Seq A exon
AGGGTGTGCCCAGGTAGGTATCCTCAGGGCACTAGCAGAATGTGGCATCCCCGTGGACATAATCGGAGGGACATCCATTGGGGCTTTCATGGGCGCTCTGTTTGCTGAGGAGCGAAGCTACAGCCAGATACGGATCCGGGCCAAGCAGTGGGCAGAG
Seq C2 exon
GATATGACATCAATGGTGAAGACTATACTGGACCTGACCTACCCAATCACATCTATGTTCTCTGGCACTGGCTTCAACAGCAGCATCAGCAACATCTTCAAAGACCGGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
PF0173417=Patatin=FE(31.1=100)
C2:
PF0173417=Patatin=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGTACACACGCATTTTCCA
R:
CTCAATCTGCCGGTCTTTGAAGA
Band lengths:
234-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]