DreEX6010749 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24546279-24549284:-
Coord C1 exon
chr5:24549166-24549284
Coord A exon
chr5:24546477-24546633
Coord C2 exon
chr5:24546279-24546395
Length
157 bp
Sequences
Splice sites
3' ss Seq
TAAACACACTATACCCACAGAGG
3' ss Score
4.93
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGAGAGATGTATCAGCGAGTATTTGAGAAGCCTCCCGACCGGCATTCTGACTTCTCACGTCTGGCTCGAATCCTGACAGGCAACGCCATCGCTCTGGTGCTGGGCGGAGGAGGAGCCAG
Seq A exon
AGGCTGCTCACAGGTGGGCATCATTCGTGCAATGAGCGAGGCAGGAATCCCTGTGGATCTGATCGGCGGCACTTCCATTGGTTCATTGATAGGAGCTCTATATGCTGAAGAGCGTAGCGTCAGTCGCATGACGGTTAGGGCACGCCAGTGGGCAATG
Seq C2 exon
GATTTTGGATCCATATTTAAGAAGATCACCGATTTGACCTACCCGGTGACCTCCATGTTCACTGGAGCATCATTTAACTCCAGCATTGGCACACTCTTCCAGGACAAACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'30-38,'30-37,32-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
PF0173417=Patatin=FE(31.1=100)
C2:
PF0173417=Patatin=FE(22.8=100)
Main Skipping Isoform:
ENSDART00000002118fB4766
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGATGTATCAGCGAGTATTTGA
R:
TCAATCTGTTTGTCCTGGAAGAGTG
Band lengths:
235-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]