GgaEX1044851 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1656490-1676078:+
Coord C1 exon
chr17:1656490-1656608
Coord A exon
chr17:1668864-1669020
Coord C2 exon
chr17:1675962-1676078
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTCTCTGCACAGGGG
3' ss Score
10.51
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATAGAGATGTATGAACGTGTGTTCCAGAAGCCACCAGACCGCCACTCGGACTTCTCTCGCCTGGCTCGTGTCCTGACTGGAAATGCCATTGCCCTGGTCCTTGGTGGTGGGGGAGCCAG
Seq A exon
GGGGTGCTCCCAGGTCGGGCTTATCAGGGCGCTGATTGAAGCTGGCATCCCCGTGGATATGATTGGAGGAACGTCCATCGGCGCTTTCATGAGCGCTCTGTACGCAGAAGAACGCAGCTACAATCAGATGAGGATCAAAGCCAGGCAGTGGGCCATG
Seq C2 exon
GTTATGAATTCAGTGTTTAAGACTATTCTAGACTTGACGTATCCAATAACCTCAATGTTTTCTGGAGCAGCTTTTAACAACAGCATCAGCAACATCTTCAAGGATAAGCAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'42-44,'42-42,45-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
PF0173417=Patatin=FE(31.1=100)
C2:
PF0173417=Patatin=FE(22.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGTGTTCCAGAAGCCAC
R:
TCTGCTTATCCTTGAAGATGTTGCT
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]