BtaEX0027803 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19391859-19395314:+
Coord C1 exon
chr3:19391859-19392149
Coord A exon
chr3:19392230-19392448
Coord C2 exon
chr3:19395208-19395314
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTATCACTTGGTCAAAAAAGCTC
3' ss Score
0.16
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
CCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCTGTGAGGCCAGGCTCCACGATGCCTGTGCGGCCCACCACCAACACCTTCACCACCGTCATCCCAGCCACTCTCACCATTCGAAGCACCGTCCCACAGTCCCAGTCCCAGTCGACCAAGTCCACTCCCAGCACTTCCACCACACCCACTGCCACACAGCCGACCTCACTGGGGCACCTTGCTGTCCAGCCCCCAGGCCAATCCAGCCAGACTCAGAACCCCAAACTAG
Seq A exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGTGAAAATAGCAATGAAGTGGCCAAACTGGTGAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCAGTGGTGGTATCCAACAACAGCTCCGCACATGGCTCTCAAAGAACCAGCGGGCCTGAGTCTTCAATGAAAG
Seq C2 exon
TGACCTCGCCCATCCCAGTGTTTGATCTCCAGGATGGTGGACGGAAGATATGTCCACAGTGTAATGCTCACTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.932 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033883fB5352
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCACAAGTGTTCTCTC
R:
CGTCCACCATCCTGGAGATCA
Band lengths:
301-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development