GgaEX6026280 @ galGal3
Exon Skipping
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1957416-1959302:+
Coord C1 exon
chr25:1957416-1957595
Coord A exon
chr25:1958416-1958616
Coord C2 exon
chr25:1959193-1959302
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTTATCCTCCCTTTGGCAGTGA
3' ss Score
7.74
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAA
Seq A exon
TGAGCATCGCGAGCTTTGTGACCGTAAAGAGACCCGGAGTGACTGGTGAGAACAGCAATGAGGTTGCCAAGCTGGTGAACACCCTGAATACTGTTCCCTCGTTGGGGCAGAGCCCCGGACCAATGGTGGTGTCCAACAGCAGCCCTGTGCACGGCTCCCAGAGATCCAGCACGTCGGAGTCATCATCATCGTCGTTGAAAG
Seq C2 exon
TCAGTTCATCTCCAATTCCCACCTTTGATTTGCAAGATGGTGGCAGGAAGGTCTGCCCACGGTGTGATGCTCAGTTCCGAGTCACCGAAGCTTTAAGAGGACATATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479-'5-7,'5-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.868 C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0136316=FYVE=PU(46.4=70.3),PF139121=zf-C2H2_6=PU(80.8=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGTACACAGTTTGTCA
R:
ATGTCCTCTTAAAGCTTCGGTGAC
Band lengths:
284-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]