MmuEX0036133 @ mm9
Exon Skipping
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94668010-94674108:+
Coord C1 exon
chr3:94668010-94668300
Coord A exon
chr3:94668380-94668589
Coord C2 exon
chr3:94674002-94674108
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTCACTTGGTCAATGTAGCTC
3' ss Score
4.3
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCCCAGGTACACAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCCGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTTACCACCGTCATCCCAGCTACTCTCACCATCCGAAGCACTGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACCCCCAGTACCTCCACTACTCCCACTGCCACACAACCAACCTCACTGGGGCAGCTAGCTGGTCAGCCTCCAGGCCAGTCCAACCAGACCTCGAATCCCAAACTAG
Seq A exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGGGTTACAGGTGAAAATAGCAACGAAGTGGCCAAATTGGTGAATACTCTTAACACTGTCCCTTCCCTGGGCCAGAGTCCTGGGCCCGTGGTGGTGTCCAACAACAGTTCTGCTCAAAGAACCAGTGGGCCCGAATCTTCAGTGAAAG
Seq C2 exon
TGACCTCTTCCATCCCAGTGTTTGACCTCCAGGACGGTGGACGGAAAATATGTCCACGGTGTAATGCCCAGTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902-'10-12,'10-9,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=0.931 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCACAAGTGTTCTCTC
R:
CGTCCTGGAGGTCAAACACTG
Band lengths:
294-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: