MmuEX0036133 @ mm10
Exon Skipping
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94864088-94870186:+
Coord C1 exon
chr3:94864088-94864378
Coord A exon
chr3:94864458-94864667
Coord C2 exon
chr3:94870080-94870186
Length
210 bp
Sequences
Splice sites
3' ss Seq
TTTTCACTTGGTCAATGTAGCTC
3' ss Score
4.3
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCCCAGGTACACAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCCGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTTACCACCGTCATCCCAGCTACTCTCACCATCCGAAGCACTGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACCCCCAGTACCTCCACTACTCCCACTGCCACACAACCAACCTCACTGGGGCAGCTAGCTGGTCAGCCTCCAGGCCAGTCCAACCAGACCTCGAATCCCAAACTAG
Seq A exon
CTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGGGTTACAGGTGAAAATAGCAACGAAGTGGCCAAATTGGTGAATACTCTTAACACTGTCCCTTCCCTGGGCCAGAGTCCTGGGCCCGTGGTGGTGTCCAACAACAGTTCTGCTCAAAGAACCAGTGGGCCCGAATCTTCAGTGAAAG
Seq C2 exon
TGACCTCTTCCATCCCAGTGTTTGACCTCCAGGACGGTGGACGGAAAATATGTCCACGGTGTAATGCCCAGTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902_MULTIEX1-6/7=5-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=0.930 C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF139121=zf-C2H2_6=PU(91.3=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCCCACAAGTGTTCTCTC
R:
CGTCCTGGAGGTCAAACACTG
Band lengths:
294-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types