BtaEX0028112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26695352-26698534:-
Coord C1 exon
chr2:26698447-26698534
Coord A exon
chr2:26696831-26696967
Coord C2 exon
chr2:26695352-26696667
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTATTTTTTTAAAGCGT
3' ss Score
8.88
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
TAATCTACCTAACTCCCAGCCTCCTTCATACCAGAGACGACTTTTAGTTACTAGGTCTGGCAGGAAAATTAAAGGAAGAGGACCAAGG
Seq A exon
CGTTATCGAACTCCTTCTAGATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAGGCAGGAGATGCAGAGAGCTCAAAGAATGAGAGTATCAAGTGGTGAAAGATGGATTAAAGGGGATAA
Seq C2 exon
GAGTGAGTTAAATGAAATAAAAGAAAATCAAAGAAGCCCAGTTAGAGTAAAAGAGAAAAAAATAACTGATCATAGGCATGTGTCTGAGAGTCCAAACAGGAAAAGTGAAAAGGAAAAGAAAGTTAAAGACCATAAATCTAACAGCAAAGAAAGAGAAATCAGAAGAAATTCAGAAAAAGATGATAAATATAAGAACAAGGTAAAGAAAAGGGCCAAATCAAAAAGTAGGAGTAAGAGCAAAGAAAAATCCAAAAGTAAGGAAAGAGACACAAAGCATAATAGACATGAAGAAAAGAGGATGAAGTCAAGGAGTAAAGAAAGGGATCATGAGAATGTTAAAGAAAAAGAAAAACCTGATTCTAAAGGAAAAGAACAGGAAAGGAGTAGAAGTAAAGAGAAATCTAAACAGTTAGAATCCAAAAACAATGAGCATGATCATAATAAAAGTAAGGACAAAGACAGACGTGCACAGTCTAGGAGTAGAGAACGTGATATGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACTAGGTCTGGCAGGAA
R:
TGGCCCTTTTCTTTACCTTGT
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development