GgaEX6042402 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:18115845-18118463:-
Coord C1 exon
chr7:18118379-18118463
Coord A exon
chr7:18117412-18117548
Coord C2 exon
chr7:18115845-18117102
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTTTCTGTCAAGCGT
3' ss Score
6.27
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CAATCTATCGAATTCCCAGTCAACATATCAGAGAAGGCTGCTGGTGACCAGATCTGGAAGGAAAATAAAAGGAAGAGGACCAAGG
Seq A exon
CGTTACCGGACTCCTTCCAGATCCAGGTCAAGAGATCGATTCCGACGCAGTGAAACTCCTCCACATTGGAGGCAAGAAATGCAAAGAGCTCAAAGAATGAGAGTGTCTAGTGGAGAAAGATGGATAAAAGGAGACAA
Seq C2 exon
GAGCGAAATAAATGAAATCAGGAAAGATAATCAGAAAAGCCCAGGAAGAGGAAGGGAGAGAAAAGCATCAGACCACAGACAAGTTTCTGAAAGTCCAAGCAGAAGAGGGGAAAAAGAGAAGAAAAAAGATCATAAATCCAGCAGTAAAGACAGGGAGACGAGAAGAAATTTGGAAAAAGATGACAAGCATAATAGAAGCAAGACCAAGAAAAGAGGTAAATCTAGAAGCCATAGTAAAAGCAGGGAGAAATCAAGAAGTAAAGAAAGAGACTCCAAACACAGCAGACATGATGAGAAGAGAAGATCAAGAAGCAAAGAGAGGGACCGTGAGAAAGATAGAGAAAAAGAAAAGCACTATGATTCTAGAGGGAGAGATAAAGAAAGAAGTAGGAGTAAAGAGAGAAGCAGAAGGGCAGGTTCAAGAAGTAATGAACGTGACCATAGGAAGAGTAAAGACAGGGAGAAACATAAGTCAAGAAGCAGAGAGCGTGAGCATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-'26-22,'26-19,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTCAACATATCAGAGAAGGC
R:
CCAAATTTCTTCTCGTCTCCCTGT
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]