DreEX0057413 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3543520-3547566:+
Coord C1 exon
chr6:3543520-3543601
Coord A exon
chr6:3545025-3545176
Coord C2 exon
chr6:3546236-3547566
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCCCATCTCTCTCCTGTAGCGC
3' ss Score
11.04
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ACCCATGGCGAATTCACGACCAAACCGCACGCGCTTGGTGATGACCAGGTCGGGCCGCAGAATTAAAGGAAGAGGACCGAGG
Seq A exon
CGCTATCGGACACCGTCTCGATCCCGCTCGCGGTCCTGGGATCGGTTTCGCCGCAGTGAGACTCCTCCACACTGGAGGCATGAAATGCAAAGAACACAGAAAGCTAAAGCCAATTTAGCTGCTTCCCAGGAGCGGTGGATTAAAGGAGACAA
Seq C2 exon
AGGAGATATGTCAGAGGAAAAGACGAAAACTACTGAGCTAAGCAGCGTCAACAAGGCTAGGGGAGACAAGCAAGACACAGCAAGGAAGAACTCTGAGCAAGAAAAGAAAGTTTCAAAGCGGGACAAATCACGCAGTCCCTCCAAAGGAAGAGACCGAAAGAGAGACAAACATCGCTCCAAAAGCCGAGAAAGGGACGCTCGGAAAAAGCCAGACGCCGATGCGGAGAAGAAGAAATCTCGCAGCCGGAGCAAAAGCAAAGACAAGAAGAGGGAGAAAGAAAAGAGCAAGAAGCCTGATGACAAGCGAGGACGCTCGACTAGCAAAGAAAAAGACAGAAAGGAGAAAAATGATAAAGAGGTCGAACAGAAAGACCGAAGCAAAGAAAGAGCCAAAGACGGAGAAAAGGAGAAATCGAAGGAGGTGGAAAAGAAGAAGAACGGAGAACGAGAGCGATCCAGAAGCAAAGAAAAGGGTCGCGATGTTTCACGGAGATCCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCCGCAGAATTAAAGGAA
R:
TCTGGCTTTTTCCGAGCGTC
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]