GgaEX6042402 @ galGal3
Exon Skipping
Gene
ENSGALG00000009839 | PPIG
Description
NA
Coordinates
chr7:20079797-20082256:-
Coord C1 exon
chr7:20082172-20082256
Coord A exon
chr7:20081205-20081341
Coord C2 exon
chr7:20079797-20080895
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTTTCTGTCAAGCGT
3' ss Score
6.27
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CAATCTATCGAATTCCCAGTCAACATATCAGAGAAGGCTGCTGGTGACCAGATCTGGAAGGAAAATAAAAGGAAGAGGACCAAGG
Seq A exon
CGTTACCGGACTCCTTCCAGATCCAGGTCAAGAGATCGATTCCGACGCAGTGAAACTCCTCCACATTGGAGGCAAGAAATGCAAAGAGCTCAAAGAATGAGAGTGTCTAGTGGAGAAAGATGGATAAAAGGAGACAA
Seq C2 exon
GAGCGAAATAAATGAAATCAGGAAAGATAATCAGAAAAGCCCAGGAAGAGGAAGGGAGAGAAAAGCATCAGACCACAGACAAGTTTCTGAAAGTCCAAGCAGAAGAGGGGAAAAAGAGAAGAAAAAAGATCATAAATCCAGCAGTAAAGACAGGGAGACGAGAAGAAATTTGGAAAAAGATGACAAGCATAATAGAAGCAAGACCAAGAAAAGAGGTAAATCTAGAAGCCATAGTAAAAGCAGGGAGAAATCAAGAAGTAAAGAAAGAGACTCCAAACACAGCAGACATGATGAGAAGAGAAGATCAAGAAGCAAAGAGAGGGACCGTGAGAAAGATAGAGAAAAAGAAAAGCACTATGATTCTAGAGGGAGAGATAAAGAAAGAAGTAGGAGTAAAGAGAGAAGCAGAAGGGCAGGTTCAAGAAGTAATGAACGTGACCATAGGAAGAGTAAAGACAGGGAGAAACATAAGTCAAGAAGCAGAGAGCGTGAGCATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839-'17-20,'17-17,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTCAACATATCAGAGAAGGC
R:
CCAAATTTCTTCTCGTCTCCCTGT
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]