BtaEX0029239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19337527-19338534:-
Coord C1 exon
chr26:19338462-19338534
Coord A exon
chr26:19338051-19338207
Coord C2 exon
chr26:19337527-19337681
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCTTTGGTCTCTCAGTGG
3' ss Score
8.65
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GAGTGGCTTCCTGAGGAGTTCGTGGCGAGAATCGCCCAGCTGGACACCAAGTCGCCTGTTACCAAGATCAATG
Seq A exon
TGGCTGTCAACAGGCTGCCTGACTTCCTGGCAGCCCCCAACACTCCCGGGGACCAGCCATTGCCCCATCACCAGTGCTCCATCCACCTGAACTGTGAGGACACCCTCCTTGTCCACCAGGCCTTTGAAGACACCCTGGATGGCCTGCCTTCCAAGAG
Seq C2 exon
ACCTCTGATCGAACTCTGCATCCCTTCCTCGCTGGACCCCACCCTGGCTCCCCCCGGCTGCCACGTCGTCTCCCTCTTCACTCAGTACACGCCCTACACACTGGCTGGAGGCAAGGCCTGGGATGAGCAGCAGAGAAACACCTACGCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTCCTGAGGAGTTCG
R:
TCTGTCTGCGTAGGTGTTTCT
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development