MmuEX0038136 @ mm9
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42805809-42808645:-
Coord C1 exon
chr19:42808573-42808645
Coord A exon
chr19:42808211-42808367
Coord C2 exon
chr19:42805809-42805963
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTTTGGCTCTGCAGTGG
3' ss Score
6.81
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
GAGTGGCTTCCCGGGGCTTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCTGTCACCAAGATCAATG
Seq A exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA
Seq C2 exon
GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.302 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCCCGGGGCTTT
R:
CTTTGTCCGCATAGGTGTTTT
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: