GgaEX0009990 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21796950-21797899:+
Coord C1 exon
chr6:21796950-21797022
Coord A exon
chr6:21797102-21797258
Coord C2 exon
chr6:21797779-21797899
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCCCATGGTCCCCATCCAAGTGG
3' ss Score
1.94
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGCGGCTGCCAGAGGACTTTGTGCGGCGGATCCAGCAGCTCGACACACGTTCCCCTGTCACCAAAATCAACG
Seq A exon
TGGCGGTGGACCGGCTGCCTAGCTTCCTGGCTGCCCCCAACACCCGTGACAGCCAACCTCTGCCCCACCACTGCTGCTCCATCCACCTCAACTGCGAGGGCACACACCTCCTGCACCAGGCTTACACCGAGGCTGCCCACGGGCACCCCTCCAGCAG
Seq C2 exon
AACATCTTTCATGGAGGGATGTCTCTGGACCAGCTCTACTTCACCCGGCCAGCACCATCCTACTCGACCTACCAGTCTCCAGTCCCAGGCTTATACCTGTGCGGGAGCGGAGCCCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014_MULTIEX1-11/13=10-C2
Average complexity
C3
Mappability confidence:
93%=93=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0099613=GDI=PD(12.1=44.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCCAGAGGACTTTGTG
R:
CGCTCCCGCACAGGTATAAG
Band lengths:
178-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]