GgaEX0009990 @ galGal3
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676268-23676813:+
Coord C1 exon
chr6:23676268-23676340
Coord A exon
chr6:23676420-23676576
Coord C2 exon
chr6:23676659-23676813
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCCCATGGTCCCCATCCAAGTGG
3' ss Score
1.94
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGCGGCTGCCAGAGGACTTTGTGCGGCGGATCCAGCAGCTCGACACACGTTCCCCTGTCACCAAAATCAACG
Seq A exon
TGGCGGTGGACCGGCTGCCTAGCTTCCTGGCTGCCCCCAACACCCGTGACAGCCAACCTCTGCCCCACCACTGCTGCTCCATCCACCTCAACTGCGAGGGCACACACCTCCTGCACCAGGCTTACACCGAGGCTGCCCACGGGCACCCCTCCAGCAG
Seq C2 exon
GCCCATGATTGAGCTGTGCATCCCCTCCGCGCTGGACCCGGGGCTGGCCCCTCCAGGCTGCCACGTTGTGTCCCTCTTTACCCAGTACACTCCGTATGAGCTGGCAGGTGGGCAGCCCTGGGACGAGAAGGCTCGGAATGCTTATGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014-'12-16,'12-13,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0099613=GDI=PD(12.1=44.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGCCAGAGGACTTT
R:
GCATAAGCATTCCGAGCCTTCT
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]