GgaINT0044284 @ galGal3
Intron Retention
Gene
ENSGALG00000007014 | PYROXD2
Description
NA
Coordinates
chr6:23676420-23676813:+
Coord C1 exon
chr6:23676420-23676576
Coord A exon
chr6:23676577-23676658
Coord C2 exon
chr6:23676659-23676813
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCCATGTCTCACTCCTCCAGGCC
3' ss Score
10.11
Exon sequences
Seq C1 exon
TGGCGGTGGACCGGCTGCCTAGCTTCCTGGCTGCCCCCAACACCCGTGACAGCCAACCTCTGCCCCACCACTGCTGCTCCATCCACCTCAACTGCGAGGGCACACACCTCCTGCACCAGGCTTACACCGAGGCTGCCCACGGGCACCCCTCCAGCAG
Seq A exon
GTAGGAGGTGCTCAACTCGCCCCCTGCCCACTGCCCTGGTGGTGCCAGGGGGATGTTTTGTGGCCATGTCTCACTCCTCCAG
Seq C2 exon
GCCCATGATTGAGCTGTGCATCCCCTCCGCGCTGGACCCGGGGCTGGCCCCTCCAGGCTGCCACGTTGTGTCCCTCTTTACCCAGTACACTCCGTATGAGCTGGCAGGTGGGCAGCCCTGGGACGAGAAGGCTCGGAATGCTTATGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014:ENSGALT00000011349:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCATCCACCTCAACTG
R:
TGGGTAAAGAGGGACACAACG
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]