BtaINT0120929 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19337527-19338207:-
Coord C1 exon
chr26:19338051-19338207
Coord A exon
chr26:19337682-19338050
Coord C2 exon
chr26:19337527-19337681
Length
369 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TCCTCCCCTGTCGTACACAGACC
3' ss Score
9.34
Exon sequences
Seq C1 exon
TGGCTGTCAACAGGCTGCCTGACTTCCTGGCAGCCCCCAACACTCCCGGGGACCAGCCATTGCCCCATCACCAGTGCTCCATCCACCTGAACTGTGAGGACACCCTCCTTGTCCACCAGGCCTTTGAAGACACCCTGGATGGCCTGCCTTCCAAGAG
Seq A exon
GTGGGGGACCTGGAGACGCTTGAGCCCCTGGTTAGAGCACAGGGTGTGTGTGGGTGGTGGGGTGCAGGGCCCACTGCACATTTACCTCCCTGGGCCGGCTGGGACCCGAGAACCTGGAGCCTGGAGATCTGGCTGAGTCAGGGACCTGGGGATGAGAGAGCTCCCCATGGGTGGTCTGGACTGTCCTACTGGTCACCAAGCCTGCGCAGACAAACACCACCATAACCTTACGGAGATGATCCATCCGGCCCCAGCATCCCCAGCTCAGGTCTTCATTTTGTCCCATCATCTCAGGATGGCTCCACGGCCCCTTCTCTCAGGCAGGCATTGCTCTTCAGGCCCTGCCCTCTCCTCCCCTGTCGTACACAG
Seq C2 exon
ACCTCTGATCGAACTCTGCATCCCTTCCTCGCTGGACCCCACCCTGGCTCCCCCCGGCTGCCACGTCGTCTCCCTCTTCACTCAGTACACGCCCTACACACTGGCTGGAGGCAAGGCCTGGGATGAGCAGCAGAGAAACACCTACGCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313:ENSBTAT00000032952:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAACAGGCTGCCT
R:
CTCTGTCTGCGTAGGTGTTTCT
Band lengths:
310-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]