HsaINT0135641 @ hg38
Intron Retention
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr10:98388354-98390754:-
Coord C1 exon
chr10:98390598-98390754
Coord A exon
chr10:98388509-98390597
Coord C2 exon
chr10:98388354-98388508
Length
2089 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTCCTCCCTGCCCGCACAGGCC
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGGCCGTAGACAGGCTGCCCAGCTTCCTGGCGGCCCCCAATGCTCCCAGGGGCCAGCCGCTGCCCCATCACCAATGCTCCATCCACCTGAACTGTGAAGACACCCTCCTCCTTCATCAGGCCTTTGAAGATGCCATGGATGGCCTGCCTTCCCACAG
Seq A exon
GTAGGGGCCCTGGACTTTATGTTCCCTGATGTTCTTCCACATGGGCCTGGGAGGCGGGGCTGTCCATGCCACCCACAGCAGGGATCAGGCCTGGTGTTCAACCTTCACAGTGACTTAGGATCTGCCAAAATCCATACTCCTAAGGACAGGAAGTGCATCCCAGGTGAAAAATCTGAGGATGAGGGCAGGTAAGGGGTGAAGAGCGGCTCAGGTTAGCAGAAGGGGCAGAGGGGCAGAGCACTGCCCAGGAAAGTGCTGGGGCTGGGGAAGAAGAGGAGAAAATGTGTTCTGGGAGAGCAAAGGAAGTTCTCTCATTCAGAGCCCGTCAGAGAGCACGCACTCACCGAGTCCCCTGCTCCGTAGCCTTTCTTTTTCTGATAATCTGCCTTCTTGCAAAACTTCTAAAAGCATTTCCCACCTCCCACTGCAGCTGTATTTCCATTCTTCTGGAACAGGCAGGGGCGCTATAGGAGCAAGTGCCTTTCCATCCTGTCCGCTGTCCAGCACACACTGTTGAAAACCTACTCAGTGCTGGACTCTGTACTGGGTATGGGCTGGGAGAATTAGCGGGGCAGGGGCATGAAACTGACACAAAGCTTATGATAGGACAGGTACACAAATATTTATAGCATGTGGTAAAGAAGATGTGCGCCTGGAAAGAAGGGTATAGGGCAAAGTTCATTCATCCATTTATAAATATTCTGGGGTCTCTATTCTGTGCCAGGCTTGGTTCAGTGAGTGGGCACAGATCAGCAAGCAAAGCCAAGAAAGTCTCAGGTCGTTGACTCTCTATCCATGAGAGGAAGACAATCAACAAGTAAGCACTGATGATGAGCACTGTGGAGAAAAATAGGCAGGGAAGGGGAGGAAAGGCTTCTCTAATAACGTGGCACTTGAGCGGAGACCGGAAGGAAGTGAGAATACAGATCTTATGGGTATCTGGGGAAAAAACGTCCAGACAGAGGGAAGGTCAGGTGCAAAGGCCCTGGGGCAGGAGTGTGCTGCTGTATAGGAGGCACAGGGACGAGGCCAGAGTGGCTGGAGAGAGAGCACCTGGGAATGAAGGGTCTCGGATGGTGCTGGGTCTTGTCAAGTGCCCTGGCTCTTACTCCAGGAAAGTTTGTGCAGAGCCTGCCTTATGCTTTAAAAAGACCAACCTGGACACTGTATGCAGAAAAAGTTAAGGCATCTGTTGCAATGGGTTACTGTTGCAGAATCCAAGGGAGAGAGGACAGTGGCTTGGACAAGGGTGGGGGCAGGGGAAGTGATGAGAAGTGTTGGAAGACTGGGTATGTTTTGAAGGTGAAGCCAACAGGACTTTCTGTTGGATAGGGAGTGGGATGTGGGTCAAAAAAAGGAGCGACTGTGAAATGATGCCTCCATTTACTGAAAAGAGGAAGAGGCGGTGGGGGTGGAGCAGATTTTAGAGGCTAATCAGGCATTGGGGTTTGAACAGGGGATGTTTGAGATCCCTGGTGGACATCCGAGTTCAGCGAGAACATTGCAGCTGAGGGACGCAGGGAGAAGGGGCATTTCCCGTGGCCTTGAAGGAGACTCATATTTGGAGATCAGAGGGAGAACATGCTCCAGGTAGAAAAGGTGTGGCAGGCAAAGGTGGTGGGGTGGGAAGCAGGTCACAGCTCTGCTGGGGCTCGGGGCAGCCCTAGCAGCTCTGTCTTCCATTGGTCTGCTCTGGAAAAGACAGTCAGGCCACTAAAGCCTGGCTGAAATCTGGCTGCTTGGGCGCCTGCTGTCTTAGGCCTGGCCCCTTTCCACACTCCCACTGTCTGTGTGGACCTTCGAGACATTTGCGTTTGGGAGCTGTGGTTAGAGCACAGCGTGTGATGAAGGCAGGCAAGGACAGGCCATGCATTCGGGGGTCTGGGGTCAGGCGAGCTCCTCACAGGTGCTCTGGACCACGCTAGCAGCCGCTAAGCCCGTGCAGGTGGACAACCACTGTGGCTGTAGAGCGACAATCGCCCAGAATTGGTGTCATCTCAGGGCCTCCACTGTGTCCCAAGTCATCTCGGATGCCCTACCCTCCGCACTGCTGCTCTTTAGACCTGCCGTCTCCTCCCTGCCCGCACAG
Seq C2 exon
GCCTGTGATTGAGCTCTGCATCCCTTCCTCGCTGGACCCCACCCTGGCTCCCCCTGGCTGCCATGTAGTCTCCCTCTTCACTCAGTACATGCCCTATACGCTGGCTGGAGGCAAGGCCTGGGACGAGCAGGAGAGAGACGCTTATGCAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943:ENST00000370575:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development